INTERNATIONAL STANDARD BOOK NUMBER
(Number (ISBN
9783642347498
NATIONAL BIBLIOGRAPHY NUMBER
Country Code
IR
Number
EN-58805
LANGUAGE OF THE ITEM
.Language of Text, Soundtrack etc
انگلیسی
COUNTRY OF PUBLICATION OR PRODUCTlON
Country of publication
IR
TITLE AND STATEMENT OF RESPONSIBILITY
Title Proper
Computational Biolog
General Material Designation
[Book]
Other Title Information
:A Practical Introduction to BioData Processing and Analysis with Linux, MySQL, and R
First Statement of Responsibility
/ by R?╢bbe W?╝nschiers
EDITION STATEMENT
Edition Statement
2nd ed. 2013.
.PUBLICATION, DISTRIBUTION, ETC
Place of Publication, Distribution, etc.
Berlin, Heidelberg
Name of Publisher, Distributor, etc.
: Springer Berlin Heidelberg :Imprint: Springer,
Date of Publication, Distribution, etc.
, 2013.
PHYSICAL DESCRIPTION
Specific Material Designation and Extent of Item
XXIX, 449 p. 80 illus., 66 illus. in color., online resource.
NOTES PERTAINING TO PUBLICATION, DISTRIBUTION, ETC.
Text of Note
Electronic
CONTENTS NOTE
Text of Note
This greatly expanded 2nd edition provides a practical introduction to - data processing with Linux tools and the programming languages AWK and Perl - data management with the relational database system MySQL, and - data analysis and visualization with the statistical computing environment R for students and practitioners in the life sciences. Although written for beginners, experienced researchers in areas involving bioinformatics and computational biology may benefit from numerous tips and tricks that help to process, filter and format large datasets. Learning by doing is the basic concept of this book. Worked examples illustrate how to employ data processing and analysis techniques, e.g. for - finding proteins potentially causing pathogenicity in bacteria, - supporting the significance of BLAST with homology modeling, or - detecting candidate proteins that may be redox-regulated, on the basis of their structure. All the software tools and datasets used are freely available. One section is devoted to explaining setup and maintenance of Linux as an operating system independent virtual machine. The author's experiences and knowledge gained from working and teaching in both academia and industry constitute the foundation for this practical approach.
Text of Note
Part I Whetting Your Appetite -- 1 Introduction -- 2 Content of this Book -- Part II Computer & Operating Systems -- 3 Unix/Linux -- Part III Working with Linux -- 4 The First Touch -- 5 Working with Files -- 6 Remote Connections -- 7 Playing -- 8 Using the Shell -- 9 Installing BLAST+ and ClustalW -- 10 Shell Programming -- 11 Regular Expressions -- 12 Sed -- Part IV Programming -- 13 AWK -- 14 Perl -- 15 Other Programming Languages -- Part V Advanced Data Analysis -- 16 Relational Databases with MySQL -- 17 The Statistics Suite R -- Part VI Worked Examples -- 18 Genomic Analysis of the Pathogenicity Factors from E. coli Strain O157:H7 and EHEC Strain O104:H4 -- 19 Limits of BLAST & Homology Modeling -- 20 Virtual Sequencing of pUC18c -- 21 Querying for Potential Redox-Regulated Enzymes -- Part VII Additional Material -- References -- A Supplementary Information -- Solutions -- Index.
TOPICAL NAME USED AS SUBJECT
Life sciences
Computer science
Biochemistry
Proteomics
Bioinformatics
Biology, Data processing
Electronic books
LIBRARY OF CONGRESS CLASSIFICATION
Class number
E-BOOK
PERSONAL NAME - PRIMARY RESPONSIBILITY
W?╝nschiers, R?╢bbe.
PERSONAL NAME - SECONDARY RESPONSIBILITY
SpringerLink (Online service)
ORIGINATING SOURCE
Country
ایران
ELECTRONIC LOCATION AND ACCESS
Host name
9783642347481.pdf
Access number
عادی
Compression information
عادی
Date and Hour of Consultation and Access
9783642347481.pdf
Electronic Format Type
متن
old catalog
e
BL
1
a
Y
