Stochastic Proximity Embedding: A Simple, Fast and Scalable Algorithm for Solving the Distance Geometry Problem /Dimitris K. Agrafiotis, Deepak Bandyopadhyay, Eric Yang --Applications to Protein Conformations --Distance Geometry for Realistic Molecular Conformations /Gordon M. Crippen --Distance Geometry in Structural Biology: New Perspectives /Th?شr?سse E. Malliavin, Antonio Mucherino, Michael Nilges --Using a Distributed SDP Approach to Solve Simulated Protein Molecular Conformation Problems /Xingyuan Fang, Kim-Chuan Toh --An Overview on Protein Structure Determination by NMR: Historical and Future Perspectives of the use of Distance Geometry Methods /Fabio C. L. Almeida, Adolfo H. Moraes, Francisco Gomes-Neto.
A Topological Interpretation of the Walk Distances /Pavel Chebotarev, Michel Deza --Methods --Distance Geometry Methods for Protein Structure Determination /Zachary Voller, Zhijun Wu --Solving the Discretizable Molecular Distance Geometry Problem by Multiple Realization Trees /Pedro Nucci, Loana Tito Nogueira, Carlile Lavor --ASAP: An Eigenvector Synchronization Algorithm for the Graph Realization Problem /Mihai Cucuringu --Global Optimization for Atomic Cluster Distance Geometry Problems /Marco Locatelli, Fabio Schoen --Solving Molecular Distance Geometry Problems Using a Continuous Optimization Approach /Rodrigo S. Lima, J. M. Mart?ضnez --DC Programming Approaches for Distance Geometry Problems /Hoai An Le Thi, Tao Pham Dinh --
Theory --Universal Rigidity of Bar Frameworks in General Position: A Euclidean Distance Matrix Approach /Abdo Y. Alfakih --Mixed Volume and Distance Geometry Techniques for Counting Euclidean Embeddings of Rigid Graphs /Ioannis Z. Emiris, Elias P. Tsigaridas, Antonios Varvitsiotis --The Discretizable Molecular Distance Geometry Problem seems Easier on Proteins /Leo Liberti, Carlile Lavor, Antonio Mucherino --Spheres Unions and Intersections and Some of their Applications in Molecular Modeling /Michel Petitjean --Is the Distance Geometry Problem in NP? /Nathanael Beeker, St?شphane Gaubert, Christian Glusa, Leo Liberti --Solving Spatial Constraints with Generalized Distance Geometry /Lu Yang --