Monitoring Autophagy in Mammalian Cultured Cells through the Dynamics of LC3 / Shunsuke Kimura, Naonobu Fujita, Takeshi Noda, Tamotsu Yoshimori -- Methods for Monitoring Autophagy Using GFP‐LC3 Transgenic Mice / Noboru Mizushima -- Using Photoactivatable Proteins to Monitor Autophagosome Lifetime / Dale W. Hailey, Jennifer Lippincott‐Schwartz -- Assaying of Autophagic Protein Degradation / Chantal Bauvy, Alfred J. Meijer, Patrice Codogno -- Sequestration Assays for Mammalian Autophagy / Per O. Seglen, Anders Øverbye, Frank Sætre -- Assays to Assess Autophagy Induction and Fusion of Autophagic Vacuoles with a Degradative Compartment, Using Monodansylcadaverine (MDC) and DQ‐BSA / Cristina Lourdes Vázquez, María Isabel Colombo -- The GST‐BHMT Assay and Related Assays for Autophagy / Patrick B. Dennis, Carol A. Mercer -- Monitoring Starvation‐Induced Reactive Oxygen Species Formation / Ruth Scherz‐Shouval, Zvulun Elazar -- Flow Cytometric Analysis of Autophagy in Living Mammalian Cells / Elena Shvets, Zvulun Elazar -- Monitoring Autophagy by Electron Microscopy in Mammalian Cells / Päivi Ylä‐Anttila, Helena Vihinen, Eija Jokitalo, Eeva‐Liisa Eskelinen -- Monitoring Mammalian Target of Rapamycin (mTOR) Activity / Tsuneo Ikenoue, Sungki Hong, Ken Inoki -- Monitoring Autophagic Degradation of p62/SQSTM1 / Geir Bjørkøy, Trond Lamark, Serhiy Pankiv, Aud Øvervatn, Andreas Brech, Terje Johansen -- Cytosolic LC3 Ratio as a Quantitative Index of Macroautophagy / Motoni Kadowaki, Md. Razaul Karim -- Method for Monitoring Pexophagy in Mammalian Cells / Junji Ezaki, Masaaki Komatsu, Sadaki Yokota, Takashi Ueno, Eiki Kominami -- Mitophagy in Mammalian Cells: The Reticulocyte Model / Ji Zhang, Mondira Kundu, Paul A. Ney -- Assessing Mammalian Autophagy by WIPI‐1/Atg18 Puncta Formation / Tassula Proikas‐Cezanne, Simon G. Pfisterer -- Correlative Light and Electron Microscopy / Minoo Razi, Sharon A. Tooze -- Semiconductor Nanocrystals in Autophagy Research: Methodology Improvement at Nanosized Scale / Oleksandr Seleverstov, James M. Phang, Olga Zabirnyk -- Methods to Monitor Chaperone‐Mediated Autophagy / Susmita Kaushik, Ana Maria Cuervo -- Methods to Monitor Autophagy of Salmonella enterica serovar Typhimurium / Cheryl L. Birmingham, John H. Brumell -- Monitoring Autophagy during Mycobacterium tuberculosis Infection / Marisa Ponpuak, Monica A. Delgado, Rasha A. Elmaoued, Vojo Deretic -- Streptococcus‐, Shigella‐, and Listeria‐Induced Autophagy / Michinaga Ogawa, Ichiro Nakagawa, Yuko Yoshikawa, Torsten Hain, Trinad Chakraborty, Chihiro Sasakawa -- Kinetic Analysis of Autophagosome Formation and Turnover in Primary Mouse Macrophages / Michele S. Swanson, Brenda G. Byrne, Jean‐Francois Dubuisson -- Monitoring Macroautophagy by Major Histocompatibility Complex Class II Presentation of Targeted Antigens / Monique Gannagé, Christian Münz -- Detachment‐Induced Autophagy In Three‐Dimensional Epithelial Cell Cultures / Jayanta Debnath -- Methods for Inducing and Monitoring Liver Autophagy Relative to Aging and Antiaging Caloric Restriction in Rats / Alessio Donati, Gabriella Cavallini, Ettore Bergamini -- Physiological Autophagy in the Syrian Hamster Harderian Gland / Ignacio Vega‐Naredo*, Ana Coto‐Montes