DNA replication initiation / Stephen J. Aves -- DNA replication fork proteins / Ulrich Hübscher -- Random and site-specific replication termination / Jacob Z. Dalgaard ... [et al.] -- Checkpoint regulation of DNA replication / Erik Boye, Henriette C. Skjølberg, and Beáta Grallert -- Introduction to molecular combing : genomics, DNA replication, and cancer / John Herrick and Aaron Bensimon -- Replication initiation point mapping : approach and implications / Sapna Das-Bradoo and Anja-Katrin Bielinsky -- Purification of restriction fragments containing replication intermediates from complex genomes for 2-D gel analysis / Larry D. Mesner, Pieter A. Dijkwel, and Joyce L. Hamlin -- Topological analysis of plasmid DNA replication intermediates using two-dimensional agarose gels / Olivier Hyrien -- Analysis of telomeric DNA replication using neutral-alkaline two-dimensional gel elctrophoresis / Svetlana Makovets -- Chromatin immunoprecipitation of replication factors moving with the replication fork / Jordan B. Rapp ... [et al.] -- Density transfer as a method to analyze the progression of DNA replication forks / José Antonio Tercero -- High-resolution mapping of points of site-specific replication stalling / Sonya Vengrova and Jacob Z. Dalgaard -- DNA replication in nucleus-free xenopus egg extracts / Ronald Lebofsky, Tatsuro Takahashi, and Johannes C. Walter -- ChIP-chip to analyze the binding of replication proteins to chromatin using oligonucleotide DNA microarrays / Christopher J. Viggiani, Jennifer G. Aparicio, and Oscar M. Aparicio -- Analyzing origin activation patterns by copy number change experiments / Miruthubashini Raveendranathan and Anja-Katrin Bielinsky -- Detection of replication origins using comparative genomics and recombinational ARS assay / Conrad A. Nieduszynski and Anne D. Donaldson -- Isolation of restriction fragments containing origins of replication from complex genomes / Larry D. Mesner and Joyce L. Hamlin -- Application of alkaline sucrose gradient centrifugation in the analysis of DNA replication after DNA damage / Sascha Raschke, Jun Guan, and George Iliakis -- Isolation of recombinant DNA elongation proteins / Barbara van Loon, Elena Ferrari, and Ulrich Hübscher -- In vitro assays for studying helicase activities / Jeong-Hoon Kim and Yeon-Soo Seo -- The use of 2-aminopurine fluorescence to study DNA polymerase function / Linda J. Reha-Krantz -- Single-molecule observation of prokaryotic DNA replication / Nathan A. Tanner and Antoine M. van Oijen -- Visualization of DNA replication sites in mammalian nuclei / Daniela S. Dimitrova -- Cell-cycle synchrony for analysis of S. pombe DNA replication / Douglas D. Luche and Susan L. Forsburg -- Measuring DNA content by flow cytometry in fission yeast / Sarah A. Sabatinos and Susan L. Forsburg -- Microscopy techniques to examine DNA replication in fission yeast / Marc D. Green, Sarah A. Sabatinos, and Susan L. Forsburg -- Using the DHFR heat-inducible degron for protein inactivation in Schizosaccharomyces pombe / Stephen E. Kearsey and Juraj Gregan -- Assays used to study the DNA replication checkpoint in fission yeast / Eishi Noguchi ... [et al.] -- Incorporation of thymidine analogs for studying replication kinetics in fission yeast / Nicholas Rhind -- The fast-halo assay for the assessment of DNA damage at the single-cell level / Piero Sestili -- Monitoring homologous recombination following replication fork perturbation in the fission yeast Schizosaccharomyces pombe / Fekret Osman and Matthew C. Whitby -- Computational methods to study kinetics of DNA replication / Scott Cheng-Hsing Yang, Michel G. Gauthier, and John Bechhoefer -- Use of DNA combing to study DNA replication in Xenopus and human cell-free systems / Kathrin Marheineke ... [et al.] -- Electron microscopy methods for studying in vivo DNA replication intermediates / Massimo Lopes -- Determining the replication dynamics of specific gene loci by single-molecule analysis of replicated DNA / Agnieszka Demczuk and Paolo Norio -- Use of DNA combing for studying DNA replication in vivo in yeast and mammalian cells / Etienne Schwob ... [et al.]