Microarray analysis of the physical genome: methods and protocols
New York
Humana Press
c2009
x, 223 p.: ill.; 27 cm.
Methods in molecular biology, 4601-5473
556
Includes bibliographical references and index
edited by Jonathan R. Pollack
1
DNA microarray technology. Introduction/ J.R. Pollack -- Comparative genomic hybridization on BAC arrays/ B.P. Coe ... ]et al.[ -- Comparative genomic hybridization on spotted oligonucleotide microarrays/ Y.H. Kim and J.R. Pollack -- Comparative genomic hybridization by representational oligonucleotide microarray analysis/ R. Lucito and J. Byrnes -- Application of oligonucleotides arrays for coincident comparative genomic hybridization, ploidy status and loss of heterozygosity studies in human cancers/ J.K. Cowell and K.C. Lo -- Molecular inversion probe assay for allelic quantitation/ H. Ji and K. Welch -- A whole-genome amplification protocol for a wide variety of DNAs, including those from formalin-fixed and paraffin-embedded tissue/ P.L. Paris -- Algorithms for calling gains and losses in array CGH data/ P. Wang -- Methylation analysis by microarray/ D.E. Deatherage ... ]et al.[ -- Methylation analysis by DNA immunoprecipitation )MeDIP(/ E.A. Vucic ... ]et al.[ -- Combining chromatin immunoprecipitation and oligonucleotide tiling arrays )ChIP-Chip( for functional genomic studies/ J. Eeckhoute, M. Lupien and M. Brown -- ChIP-Chip: algorithms for calling binding sites/ X.S. Liu and C.A. Meyer -- Mapping regulatory elements by DNaseI hypersensitivity chip )DNase-Chip(/ Y. Shibata and G.E. Crawford -- Microarray analysis of DNA replication timing/ N. Karnani, C.M. Taylor and A. Dutta -- Integration of diverse microarray data types/ K. Salari and J.R. Pollack