Affinity depletion of plasma and serum for mass spectrometry-based proteome analysis /Julian A.J. Jaros ... [et al.] --Tissue sample preparation for biomarker discovery /Yoshiyuki Suehara, Daisuke Kubota, and Tsuyoshi Saito --Subcellular fractionation for identification of biomarkers : serial detergent extraction by subcellular accessibility and solubility /Sun-II Hwang and David K. Han --Analysis of secreted proteins /Valeria Severino, Annarita Farina, and Angela Chambery --Preparation of human cerebrospinal fluid for proteomics biomarker analysis /Timothy J. Waybright --Proteomic analysis of frozen tissue samples using laser capture microdissection /Sumana Mukherjee ... [et al.] --Use of formalin-fixed, paraffin-embedded tissue for proteomic biomarker discovery /David B. Krizman and Jon Burrows --Phosphopeptide enrichment using offline titanium dioxide columns for phosphoproteomics /Li-Rong Yu and Timothy Veenstra --iTRAQ-labeling for biomarker discovery /Leroi V. DeSouza, S?شbastien N. Voisin, and K.W. Michael Siu --Analysis of glycoproteins for biomarker discovery /Jintang He ... [et al.] --SILAC in biomarker discovery /Benjamin C. Orsburn --Trypsin-mediated 18O/16O labeling for biomarker discovery /Xiaoying Ye ... [et al.] --Two-dimensional SDS-PAGE fractionation of biological samples for biomarker discovery /Thierry Rabilloud and Sarah Triboulet --Informatics of protein and posttranslational modification detection via shotgun proteomics /Jerry D. Holman, Surendra Dasari, and David L. Tabb --Quantitation of met tyrosine phosphorylation using MRM-MS /Zhaojing Meng --Preparation of human serum for prolactin measurement by multiple reaction monitoring mass spectrometry /Timothy J. Waybright ... [et al.] --Label-free quantitative shotgun proteomics using normalized spectral abundance factors /Karlie A. Neilson ... [et al.] --Employment of complementary dissociation techniques for body fluid characterization and biomarker discovery /David M. Good and Dorothea Rutishauser --Phosphopeptide microarrays for comparative proteomic profiling of cellular lysates /Liqian Gao ... [et al.] --Tissue preparation for MALDI-MS imaging of protein and peptides /Simona Colantonio and Roberta M. Smith --Plant proteogenomics : from protein extraction to improved gene predictions /Brett Chapman ... [et al.] --Label-free differential analysis of murine postsynaptic densities /Scott P. Goulding, Michael J. MacCoss, and Christine C. Wu --Fractionation of peptides by strong cation-exchange liquid chromatography /King C. Chan and Haleem J. Issaq.