Advances in genome rearrangement algorithms /Masud Hasan,M. Sohel Rahman --Computing genomic distances : an algorthmic viewpoint /Guillaume Fertin,Irena Rusu --Wavelet algorithms for DNA analysis /Carlo Cattani --Haplotype inference models and algorithms /Ling-Yun Wu --Untangling biological networks using bioinformatics /Gaurav Kumar,Adrian P. Cootes,Shoba Ranganathan --Probablistic approaches for investigating biological networks /Jaeraemie Bourdon,Damien Eveillard --Modeling and analysis of biological networks with model checking /Dragan Boesnaecki... [et al.] --Reverse engineering of molecular networks from a common combinatorial approach /Bhaskar DasGupta,Paola Vera-Licona,Eduardo Sontag --Unsupervised learning for gene regulation network inference from expression data : a review /Mohamed Elati,Caeline Rouveirol --Approaches to construction and analysis of microRNA-mediated networks /Ilana Lichtenstein... [et al.].
Novel combinatorial and information-theoretic alignment-free distances for biological data mining /Chiara Epifanio... [et al.] --In silico methods for the analysis of metabolites and drug molecules /Varun Khanna,Shoba Ranganathan --Motif finding algorithms in biological sequences /Tarek El Falah,Mourad Elloumi,Thierry Lecroq --Computational characterization of regulatory regions /Enrique Blanco --Algorithmic issues in the analysis of chip-seq data /Federico Zambelli,Giulio Paves --Approaches and methods for operon prediction based on machine learning techniques /Yan Wang... [et al.] --Protien function prediction with data-mining techniques /Xing-Ming Zhao,Luonan Chen --Protein domain boundary prediction /Paul D. Yoo,Bing Bing Zhou,Albert Y. Zomaya --Introduction to RNA structure and pseudoknot prediction /Jana Sperschneider,Amitava Datta --Phylogenetic search algorithms for maximum likelihood /Alexandros Stamatakis --Heuristic methods for phylogenetic reconstruction with maximum parsimony /Adrien Goeeffon,Jean-Michel Richer,Jin-Kao Hao --Maximum entropy method for composition vector method /Raymond H.-F. Chan,Roger W. Wang,Jeff C.-F. Wong --Microarray gene expression data analysis /Alan Wee-Chung Liew,Xiangchao Gan --Biclustering of microarray data /Wassim Ayadi,Mourad Elloumi --Computational models for condition-specific gene and pathway inference /Yu-Qing Qiu... [et al.] --Heterogeneity of differential expression in cancer studies : algorithms and methods /Radha Krishna Murthy Karuturi --Comparative genomics : algorithms and applications /Xiao Yang,Srinivas Aluru --
String data structures for computational molecular biology /Christos Makris,Evangelos Theodoridis --Efficient restricted-case algorithms for problems in computational biology /Patricia A. Evans,H. Todd Wareham --Finite automation in pattern machining /Jan Holub --New developments in processing of degenerate sequences /Pavlos Antoniou,Costas S. Iliopoulos --Exact search algorithms for biological sequences /Eric Rivals,Leena Salmela,Jorma Tarhio --Algorithmic aspects of arc-annotated sequences /Guillaume Blin,Maxime Crochemore,Staephane Vialette --Algorithmic issues in DNA barcoding problems /Bhaskar DasGupta,Ming-Yang Kao,Ion Maeandoiu --Recent advances in weighted DNA sequences /Manolis Christodoulakis,Costas S. Iliopoulos --DNA computing for subgraph isomorphism problem and related problems /Sun-Yuan Hsieh,Chao-Wen Huang,Hsin-Hung Chou --Graphs in bioinformatics /Elsa Chacko,Shoba Ranganathan --Flexible data store for managing bioinformatics data /Bassam A. Alqaralleh... [et al.] --Algorithms for the alignment of biological sequences /Ahmed Mokaddem,Mourad Elloumi --Algorithms for local structural alignment and structural motif identification /Sanguthevar Rajasekaran,Vamsi Kundeti,Martin Schiller --Evolution of the clustal family of multiple sequence alignment programs /Mohamed Radhouene Aniba,Julie Thompson --Filters and seeds approaches for fast homology searches in large datasets /Nadia Pisanti,Mathieu Giraud,Pierre Peterlongo --